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Ohio Sea Grant College Program
and Stone Laboratory

Ohio Sea Grant and Stone Laboratory

Phylogenetic analysis and physiological characterization of photosynthetic picoplankton in Lake Erie

Project Number: R/ER-073, Progress Report

Start Date: 3/31/2007

Completion Date: 2/28/2009

Revision Date: 10/21/2009

Co-Principal Investigator(s)1.Robert M.L. McKay, Biological Sciences Bowling Green State University*
This shows the current affiliation and may not match affiliation at time of participation. *

Funding Record

Source: Ohio Sea Grant College Program
Source FundState MatchPass Through
Total$ 116,608.00$ 86,678.00$ 0.00

Objectives

A unique assemblage of photosynthetic picoplankton (Ppico) is present in Lake Erie as determined from samples collected between 2002-04.  Ppico contributes 25-31% to total chlorophyll, with the highest contribution in the eastern basin. Synechococcus sequences dominate the16S rDNA clone library (227 of 291 clones) for 7 Erie stations sampled in 2002 (Wilhelm, Eldridge and Bullerjahn, ASLO Winter Meeting 2005). The fact that Synechococcus sequences dominate our Lake Erie cyanobacterial clone libraries but are absent from reports spanning from 1969-1987 warrants more attention. Use of PCR primers specific to marine Prochlorococcus ITS regions suggest the presence of marine Prochlorococcus-like populations in samples collected in 2002 and several stations in 2004. These data suggest that abundant cyanobacteria are distributed throughout Lake Erie, and that populations may be atypical of those examined in other freshwater environments.  Overall, we will evaluate the ecology of Ppico, as defined by the physiology and population composition of dominant taxa present in Lake Erie during the summer.  The initial work involves phylogenic analyses to reveal and quantitate the Ppicos present in Lake Erie over the summer.    In sum, we pose the following question: What is the phylogenic diversity of dominant Ppico in the lake, and is it a stable or dynamic population through the summer? Ultimately, once we know the Ppicos present, we will culture representative species to determine their physiological characteristics.  

Abstract

In this project, we have examined the composition of the photosynthetic picoplankton (Ppico) in Lake Erie, and determined seasonal shifts in the population.  Our data have clearly shown that the endemic Ppico community is composed largely of picocyanobacteria that are distributed worldwide, in contrast to Lake Superior, where the Ppico community is novel and endemic to the lake (Ivanikova et al. 2008).  We have brought into culture the dominant strains of Ppico and we are currently examining their physiological properties.  During summer we see a transition from a community dominated by Synechococcus sp. strain KD3 to one dominated by a distinct strain termed ARC-21.

One unexpected finding of this work is the presence of abundant actinobacteria In Lake Erie that were identified in our molecular screening of ribosomal RNA genes.  Many of these actinobacteria also have the genes for rhodopsin, suggesting that alternative types of photosynthesis (via rhodopsin-mediated proton-pumping) are common in the Lake.

Rationale

Reliable observations and predictions on pelagic food webs can only be drawn from sampling accurately reflecting key components of the food chain.  Our present knowledge of pelagic food webs in the Lake Erie is fragmented, because the abundance, taxonomic composition, and production of Ppico has not been adequately accounted for in present models. Our work will help provide estimates of primary production by Ppicos in Lake Erie across relevant ecological gradients.  Furthermore, our understanding of oxygen gradients in the Lake is incomplete and inadequate without considering the contribution of Ppico to total photosynthetic oxygen production. Overall, linking Ppico metabolism (contributing 30% of total chl) to environmental variables such as temperature, light, and nutrients provides information needed to manage long–term ecosystem alterations, such as climate change or the effect of invasive species.

Methodology

The two year study will evaluate the phylogeny of the Ppico assemblage, with respect to relevant in-lake gradients that we know exist (light, temperature, oxygen). For example, we will analyze the taxonomic composition of the Ppico community before and after the onset of central basin anoxia using both direct counts and molecular tools described below.  Ppico populations will be studied by sampling primarily central basin stations. Samples will be assayed using both ecophysiological measurements (pigments, oxygen and nutrients), and molecular phylogenetics (PCR of 16S rDNA, 16S-23S ITS and rbcL sequences with quantification by qPCR).   PCR amplicons of sequences (16S, 16-23S ITS) from samples collected throughout the lake will be compared to identify the relatedness of these sequences to known sequences from marine and freshwater environments. Quantitative PCR (qPCR) with cyanobacterial specific and Prochlorococcus 16-23S ITS primers will reveal the relative abundance of the individual members of the Ppico assemblage, which in turn will be compared with water column estimates derived using direct counts.  Culturing of the abundant Ppicos from the hypoliminion prior and after anoxia will allow physiological studies aimed at determining their photosynthetic performance in response to temperature, light and nutrients.

Publications & Media

Peer-reviewed Publications
PDF: Ilikchyan, I.N., R.M.L. McKay, J.P. Zehr, S.T. Dyhrman and G.S. Bullerjahn 2009, Detection and expression of the phosphonate transporter gene phnD in marine and freshwater picocyanobacteria
Environmental Microbiology. Made available by Ohio Sea Grant as OHSU-RS-300.
Peer-reviewed PublicationsSharma, A.K., K. Sommerfeld, G.S. Bullerjahn, A. Matteson, S.W. Wilhelm, J. Jezbera, U. Brandt, W.F. Doolittle and M.W. Hahn 2009, Widespread distribution of actinorhodopsin genes in freshwater habitats and among diverse actinobacterial lineages
ISME Journal
Newsletters & Periodicals
Newsletters & PeriodicalsBasile, Abbie 2007, Good things come in small packages: tiny plankton producing oxygen near Dead Zone
TwineLine feature
Presentations
PresentationsIvanikova, N.V., A.R. Cupp, S.W. Wilhelm, R.M.L. McKay, C.J. Gobler and G.S. Bullerjahn. 2008, Picoplanktonic cyanobacteria in Lakes Superior and Erie: phylogenies of endemic populations and cultured isolates.
Verhandlungen Internationale Vereinigung für theoretische und angewandte Limnologie NO PDF AVAILABLE
PresentationsIvanikova, N.V., L. Popels, R. McKay, G. Bullerjahn, E. Zinser, A. Cupp and S. Wilhelm 2007, Genetic diversity and population dynamics of picocyanobacteria in Lakes Superior and Erie
Abstract at SIL2007, the International Congress on Applied and Theoretical Limnology, Montreal Quebec. Talk given in a special session on plankton diversity and enumeration (Session SS39).

Supported Students

StudentIrina Ilikchyan (Graduate, Ph.D.)
Bowling Green State University