Click here to Jump to Main Content

Ohio Sea Grant College Program
and Stone Laboratory

Ohio Sea Grant and Stone Laboratory

Genetic Structure of Smallmouth Bass Populations from Nuclear and Mitochondrial DNA Sequences

Project Number: R/LR-005, Completion Report

Start Date: 3/1/2001

Completion Date: 2/28/2004

Revision Date: 8/26/2009

This project made use of Stone Laboratory Research facilities.

Classified Under: Ecosystem-Based Management

Principal Investigator(s)1.Carol A. Stepien, Lake Erie Center & DES Dept. Univrersity of Toledo

Funding Record

Source: Ohio Sea Grant College Program
Source FundState MatchPass Through
First Year$ 48,409.00$ 24,472.00$ 0.00
Second Year$ 49,245.00$ 25,452.00$ 0.00
Third Year$ 49,349.00$ 26,469.00$ 0.00
Total$ 147,003.00$ 76,393.00$ 0.00

Objectives

To characterize genetic stock structure and spatial patterning of the smallmouth bass Micropterus dolomieu in spawning regions of Lake Erie, lake basins, and among the Great Lakes, in order to evaluate diversity and delineate essential areas for its maintenance by fisheries management. The smallmouth bass is one of the most popular sport fishes in the lower Great Lakes and is a specialist in spawning habitat, with males building nests in riffle areas of tributaries or shallow lake areas. Tagging data show that most males return to close proximity of nests in previous years, suggesting genetic structure of spawning populations. Other genetic studies have shown that fry can be correctly assigned to their nest of origin. The objective of this investigation was to develop and test genetic markers for use as monitoring tools of stock structure. The primary hypothesis was that there is/is not significant population genetic and stock structure in the smallmouth bass from the lower Great Lakes. The secondary hypothesis was that genetic variation is/is not distributed differentially among spawning sites, lake basins, lakes, the sexes, and temporally. The study employed sequence data from the mitochondrial DNA control region, the cytochrome b gene, and allelic variation at eight nuclear microsatellite loci to test the population genetic structure of smallmouth bass in 14 spawning areas in Lake Erie,interpret the genetic variability of the populations in terms of their genotypes across the Great Lakes and outlying areas, and develop rapid genetic markers for direct use by management agencies. We are also completing a systematic analysis of the relationships among the black basses genus Micropterus. The molecular characters that are diagnostic of the species can then be used to identify those in sympatry at early life history stages.

Abstract

The smallmouth bass Micropterus dolomieu (family Centrarchidae) is one of the most popular sport fishes in the lower Great Lakes, with greatest fishing effort concentrated in Lake Erie. The "National Survey of Fishing, Hunting and Wildlife-Associated Recreation" from the U.S. Dept. of the Interior, the U.S. Fish and Wildlife Service, and the U.S. Department of Commerce states that Great Lakes anglers spent U.S. $1.4 billion in 1996. Of the 2.04 million anglers and 20 million angler days on the Great Lakes, 746,000 (37% of the anglers and 6.4 million angler days) were on Lake Erie. Smallmouth bass population structure has been little-studied to date and no prior population genetic investigations based on DNA sequences were found in a search of the scientific literature or in the N.I.H. GenBank data base. The Ohio Division of Wildlife (ODW) is presently focusing on studying the smallmouth bass populations and harvests on Lake Erie, to determine abundance, distribution, growth, diet, and factors affecting reproductive success. Our study interfaced with that study and those being conducted by other management agencies and universities, in order to assess the genetic diversity and population structure of smallmouth bass across the Great Lakes, with concentration in Lake Erie. We specifically tested the hypotheses of whether differences occurred among population samples in the eastern, central, and western basins of Lake Erie and among specific spawning sites in each, in order to assess the distribution of genetic variation. This genetic survey assisted management agencies in determining the role of specific spawning sites in contributing to the genetic diversity of the overall population(s).

Variation at eight nuclear microsatellite DNA loci have been analyzed for 666 smallmouth bass from 28 locations, including 425 individuals in Lake Erie; as well as Lakes Superior, Huron, and Ontario, and outgroups from the Mississippi, Ohio, St. Lawrence, and Hudson River drainages. Variation based on mitochondrial DNA control region and cytochrome b sequences is being assessed with Ph.D. student W. Calvin Borden, who was funded by this project in Dr. Stepien's Great Lakes Genetics Laboratory's former location.  Results to date reveal marked genetic differences among lake and river populations, as well as surprisingly high divergences among closely spaced riverine sites. Results do not fit an isolation by geographic distance prediction for fine scale genetic patterns, but show weak correspondence across large geographic scales. Genetic relationships thus are consistent with hypotheses regarding divergent origins through vicariance in glacial refugia, followed by colonization pathways establishing modern-day Great Lakes populations, and maintenance through behavioral site fidelity. Conservation management practices thus should preserve genetic identity and unique characters among smallmouth bass populations.

Rationale

This study addressed goals of the Strategic Plan for the Ohio Division of Wildlife and the Great Lakes Fishery Commission for maintaining fisheries, diversity, and evaluating habitat. It complements studies of smallmouth bass ecology conducted at the Ohio State University. Throughout the project, we worked closely with state and federal agencies working on Great Lakes fisheries to provide information helpful for ongoing successful management strategies. The product is a baseline data set that will be accessible by the World Wide Web for stock structure of smallmouth bass in the Great Lakes and a rapid protocol for distinguishing markers that can be used directly by state and federal management agencies.

This investigation provided fundamental data on the genetic variability and stock structure of smallmouth bass in the Great Lakes, key to maintaining diversity for successful fisheries and ecological management. Preserving genetic variability of stocks and maintaining their habitats is important for ensuring diverse and resilient species for sustainable fisheries. Genetic diversity is believed to enable native species to inhabit a variety of environments and withstand perturbations, such as exploitation, habitat degradation, and effects of invading species. It is essential that we analyze genetic diversity of the smallmouth bass at the present time and incorporate the results in our fisheries and environmental policies, including stocking programs, potential protection of some spawning areas, and procedures that help to maintain genetic variation. This project benefitted the public through providing data for maintaining a sustainable smallmouth bass fishery. This investigation was important for education and training in fisheries genetics and ecology of the Great Lakes.

Methodology

We used DNA sequencing (of the mitochondrial control region and cytochrome b gene) and nuclear microsatellite analysis to test for genetic differences among spawning sites and potential stocks. Differences among spawning habitats were tested from smallmouth bass using microsatellites at 28 different spawning sample sites for 666 individuals, including 14 sites and 425 individuals in Lake Erie; as well as Lakes Superior, Huron, and Ontario, and outgroups from the Mississippi, Ohio, St. Lawrence, and Hudson River drainages. Some of the samples included non-harmful fin clips from individuals being tagged for studies by the Ohio Division of Wildlife and the Sea Grant extension office. Comparisons of data from nuclear microsatellite loci and mtDNA sequences provided a robust analysis of genetic variation and geographic patterning of smallmouth bass.  Further comparisons of our microsatellite data with mitochondrial DNA data are being made by the Stepien laboratory.

Data analyses tested for differences among spawning groups, populations, lake basins, and lakes. This protocol was tested with the Ohio Division of Wildlife and  other management agencies, enabling them to monitor genetic variability and stock structure of populations. The resulting sequence data sets were deposited in the NIH GenBank database, making them available to all interested esearchers through the World Wide Web. We have established web sites to rapidly disseminate the results at http://www.lakeerie.utoledo.edu. Reports and reprints also are being disseminated yearly to all agencies and researchers that are interested in this project, and are available by e-mailing carol.stepien@utoledo.edu.

Benefits & Accomplishments

We analyzed a large collection of samples from Lakes Erie, Ontario, Michigan, Huron, and Superior and other areas in the smallmouth bass native North American range. We also are completing a comparative phylogenetic and phylogeographic study of the genus Micropterus (black basses) in order to develop species-specific markers for distinguishing among those sympatric at early life history stages. We compiled a baseline data set of mitochondrial DNA sequences for the control region and the cytochrome b gene, and analyzed 666 individuals from 28 populations for variation at 8 nuclear DNA microsatellite loci. Results to date show that lake, basin, river, and some intra-lake basin spawning population sites of smallmouth bass are characterized by specific mtDNA haplotype and nuclear microsatellite frequencies, revealing broad to fine-scale genetic variation. We met with the Ohio Division of Wildlife on November 20, 2002, holding a workshop by our Great Lakes Genetic Laboratory at CSU on "Using DNA data to understand fish stock structure in Lake Erie".  Another workshop was held at the University of Toledo's Lake Erie Center on December 1, 2005; in which the smallmouth bass project results and plans for the future were discussed. The Great Lakes Genetics Laboratory web site at http://www.lakeerie.utoledo features further information on this project.

Publications & Media

Peer-reviewed Publications
Peer-reviewed PublicationsC.A. Stepien, R.M. Strange, and D.M. Murphy. 2007, Broad to fine scale population genetic patterning in the smallmouth bass Micropterus dolomieu across the Laurentian Great Lakes and beyond: An interplay of behavior and geography
Molecular Ecology. Made available by Ohio Sea Grant as OHSU-RS-337.
Peer-reviewed PublicationsW.C. Borden and C.A. Stepien. 2006, Population genetic structure of smallmouth bass, Micropterus dolomieu Lacepede, in Lake Erie using mitochondrial DNA sequences and nuclear DNA microsatellites
Journal of Great Lakes Research 2006, Vol. 32. Made available by Ohio Sea Grant as OHSU-RS-299.
Presentations
PresentationsCal Borden. Population structure of smallmouth bass in Lake Erie
Oral presentation to Ohio Division of Wildlife in conference on 'Using DNA data to understand fish stock structure in Lake Erie', held at CSU on November 20, 2003.
PresentationsCal Borden and Carol A. Stepien. Using DNA to Track Smallmouth Bass Populations in Lake Erie and Tributaries
Oral Research Presentation at Woodlake Environmental Field Station Annual Conference, Cleveland State University, October 5, 2003.
PresentationsW. Calvin Borden and Carol A. Stepien. Discerning genetic structure of smallmouth bass populations in Lake Erie using mtDNA sequence and microsatellite data
Poster presentation at Cleveland State University Department of Biological, Geological, and Environmental Sciences and Cleveland Clinic Foundation Graduate Symposium at the Cleveland Clinic in November 2003.
PresentationsW. Calvin Borden and Carol A. Stepien. Discerning genetic structure of smallmouth bass populations in Lake Erie using mtDNA sequence and microsatellite data
Poster presentation at Ohio Division of Wildlife Annual Meeting. February 7, 2004.
PresentationsW. Calvin Borden and Carol A. Stepien. Discerning genetic structure of smallmouth bass populations in Lake Erie using mtDNA sequence and microsatellite data
Poster presentation at American Fisheries Society Annual Meeting, Quebec, Canada. August 11-14, 2003.
PresentationsW. Calvin Borden and Carol A. Stepien. Population structure of smallmouth bass (Micropterus dolomieu) in Lake Erie using mtDNA sequences and microsatellite data
Invited Symposium Presentation at the American Fisheries Society Annual Meeting, Quebec, Canada. August 11, 2003.
PresentationsW. Calvin Borden and Carol A. Stepien. Population structure of smallmouth bass (Micropterus dolomieu) in Lake Erie using mtDNA sequences and microsatellite data
Poster presentation at Cleveland State University's Department of Biological, Geological and Environmental Sciences and Cleveland Clinic Foundation Graduate Research Poster Show. September 26, 2002.
PresentationsW. Calvin Borden and Carol A. Stepien. Population structure of smallmouth bass (Micropterus dolomieu) in Lake Erie using mtDNA sequences and microsatellite data
Poster presentation at Woodlake Environmental Field Station Conference, Cuyahoga Valley National Park, October 25, 2003.
PresentationsC.A. Stepien and W.C. Borden. Population structure of smallmouth bass in Lake Erie
Oral research presentation at 44th Ohio Fish and Wildlife Conference, Columbus, Ohio, February 6, 2004 (given by C. Stepien)
PresentationsC.A. Stepien and W.C. Borden. 2004, Population genetic structure of smallmouth bass in the Great Lakes
Poster presentation designed and presented by Carol Stepien at the annual meeting of the Society for the Study of Evolution July 2004 held at Colorado State University, Ft. Collins, CO.
PresentationsCarol A. Stepien and Rex M. Strange. Discerning population genetic structure and geographic patterns of smallmouth bass in the Great Lakes
Poster presentation at the annual meeting of the Ohio Division of Wildlife held in Columbus, Ohio on Feb. 4, 2005.
PresentationsStepien, Carol A. and Rex M. Strange. 2005, Population Genetic Structure and Geographic Patterns of Smallmouth Bass in the Great Lakes
Oral research presentation by Carol Stepien at International Association for Great Lakes Research (IAGLR) annual meeting May 2005, held in Ann Arbor, Michigan.
PresentationsStepien, Carol A. and Rex M. Strange. 2005, Population Genetic Structure and Geographic Patterns of Smallmouth Bass in the Great Lakes
Oral research presentation by Carol Stepien at American Society of Ichthyologists and Herpetologists (ASIH) annual meeting July 2005, held in Tampa, FL.
PresentationsStepien, C.A., D. Murphy, R. Lohner 2007, Genetic patterns showing stock structure of walleye and smallmouth bass in the Great Lakes
US Geological Survey, Ann Arbor

Supported Students

StudentKora A. Dabrowska (Undergraduate, B.S.)
Case Western Reserve University
StudentCal Borden (Graduate, Ph.D.)
Cleveland State University
StudentStrange, Dr. Rex M. (Graduate, Ph.D., Ph.D.)
University of Toledo
StudentNelson, Teresa (Undergraduate, Senior Project)
Notre Dame Academy